Metagenomic analysis of human fecal samples

Lunds universitet

Lund University intends to order Metagenomic analysis of human fecal samples from large population based studies [Malmö Offspring Study (MOS) and SCAPIS-Malmö] for a research project within the Department of Medical Sciences at Lund University.
Scope
The primary scope:
Analysis of around 3 000 MOS and 3 500 SCAPIS Malmö samples (N = approximately 6 500) through 2019.
Option for the buyer to extend the contract for additional analysis throughout 2020-2023
MOS is an ongoing study and by the end of 2020 we expect another 1 500-3 000 samples to be analysed. In addition, a return visit for some participants is planned in 2020-2023, it may be necessary to analyse samples from these visits.
Also, there are ongoing intervention studies and other population studies on a smaller scale compared to MOS and SCAPIS-Malmö at the institution and there are plans to carry out metagnomic sequencing on these after 2019.

Sista ansökningsdag

Tidsfristen för mottagande av anbud var 2019-01-27. Upphandlingen offentliggjordes den 2018-12-21.

Leverantörer

Följande leverantörer nämns i tilldelningsbeslut eller andra upphandlingsdokument:

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Upphandlingshistorik
Datum Dokument
2018-12-21 Meddelande om upphandling
2019-04-03 Meddelande om tilldelning
Meddelande om upphandling (2018-12-21)
Objekt
Upphandlingens omfattning
Titel: Forskningslaboratorietjänster
Referensnummer: V 2018/2301
Kort beskrivning:
Lund University intends to order Metagenomic analysis of human fecal samples from large population based studies [Malmö Offspring Study (MOS) and SCAPIS-Malmö] for a research project within the Department of Medical Sciences at Lund University. Scope The primary scope: Analysis of around 3 000 MOS and 3 500 SCAPIS Malmö samples (N = approximately 6 500) through 2019. Option for the buyer to extend the contract for additional analysis throughout 2020-2023 MOS is an ongoing study and by the end of 2020 we expect another 1 500-3 000 samples to be analysed. In addition, a return visit for some participants is planned in 2020-2023, it may be necessary to analyse samples from these visits. Also, there are ongoing intervention studies and other population studies on a smaller scale compared to MOS and SCAPIS-Malmö at the institution and there are plans to carry out metagnomic sequencing on these after 2019.
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Meddelandeinformation
Originalspråk: engelska 🗣️
Dokumenttyp: Meddelande om upphandling
Kontraktets art: Tjänster
Reglering: Europeiska unionen – inom ramen för avtalet om offentlig upphandling
Gemensam upphandlingsterminologi (CPV)
Kod: Forskningslaboratorietjänster 📦
Ytterligare CPV-kod: Laboratorietjänster 📦
Plats för genomförandet
NUTS-region: Skåne län 🏙️

Förfarande
Förfarandetyp: Öppet förfarande
Anbudstyp: Anbud på alla delar
Kriterier för tilldelning
Det ekonomiskt mest fördelaktiga

Upphandlande myndighet
Identitet
Land: Sverige 🇸🇪
Upphandlande myndighet (typ): Statligt verk
Upphandlande myndighet (namn): Lunds universitet
Postadress: Box 117
Postnummer: 221 00
Postort: Lund
Kontakt
Webbadress: http://www.upphandling.lu.se 🌏
E-post: evelina.kelvgard@eken.lu.se 📧
URL för dokument: https://tendsign.com/doc.aspx?UniqueId=afzllaruje&GoTo=Docs 🌏
URL för deltagande: https://tendsign.com/doc.aspx?UniqueId=afzllaruje&GoTo=Tender 🌏

Referens
Datum
Avsändningsdatum: 2018-12-21 📅
Sista anbudsdag: 2019-01-27 📅
Publiceringsdatum: 2018-12-26 📅
Startdatum: 2019-03-01 📅
Slutdatum: 2023-02-28 📅
Identifierare
Meddelandenummer: 2018/S 248-573561
EUT-S-nummer: 248
Ytterligare information
Visma notice: https://opic.com/id/afzllaruje

Objekt
Upphandlingens omfattning
Kort beskrivning:
Lund University intends to order Metagenomic analysis of human fecal samples from large population based studies [Malmö Offspring Study (MOS) and SCAPIS-Malmö] for a research project within the Department of Medical Sciences at Lund University.
Scope
The primary scope:
Analysis of around 3 000 MOS and 3 500 SCAPIS Malmö samples (N = approximately 6 500) through 2019.
Option for the buyer to extend the contract for additional analysis throughout 2020-2023
MOS is an ongoing study and by the end of 2020 we expect another 1 500-3 000 samples to be analysed. In addition, a return visit for some participants is planned in 2020-2023, it may be necessary to analyse samples from these visits.
Also, there are ongoing intervention studies and other population studies on a smaller scale compared to MOS and SCAPIS-Malmö at the institution and there are plans to carry out metagnomic sequencing on these after 2019.
The assignment includes:
Sample receipt and registration
DNA extraction from initially 6 500 fecal samples and an option to buy additional sample analysis
DNA library preparation for shotgun metagenomics sequencing
DNA sequencing
Bioinformatic analysis and delivery of results to the customer
Shipment of original samples and DNA back to the customer (transport covered by customer)
The research project is part of the Biomendelian study with an overall aim to clarify the interplay between gut microbiota composition, diversity and functionality and dietary intakes, host genetic factors, circulating metabolites, inflammatory and satiety related proteins, and how such connections relate to risk of cardiometabolic diseases including prospective follow-up analyses.
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Estimated contract start date is 2019-03-01. The contract applies from the start date up to and including 2020-08-31, the buyer is subsequently entitled to extend the contract until 28.2.2023, or depending on startdate with a maximum contractperiod of four years. Extensions may be done in several rounds for shorter or longer periods.
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Contract will be signed with one (1) supplier.

Förfarande
Rättslig grund: 32014L0024
Tidpunkt för mottagande av anbud: 23:59
Språk på vilka anbud eller ansökningar om deltagande kan lämnas in: svenska 🗣️
engelska 🗣️
Anbudens giltighetstid: 2019-06-30 📅
Datum för öppnande av anbud: 2019-01-28 📅
Tidpunkt för öppnande av anbud: 00:00

Upphandlande myndighet
Identitet
Nationellt registreringsnummer: 202100-3211
Kontakt
Kontaktpunkt: Evelina Kelvgård
URL för dokument: https://tendsign.com/doc.aspx?UniqueId=afzllaruje&GoTo=Docs 🌏

Kompletterande information
Granskningsorgan
Namn: Förvaltningsrätten Malmö
Postort: Malmö
Land: Sverige 🇸🇪
Källa: OJS 2018/S 248-573561 (2018-12-21)
Meddelande om tilldelning (2019-04-03)
Objekt
Upphandlingens omfattning
Kort beskrivning:
Lund University intends to order Metagenomic analysis of human fecal samples from large population based studies [Malmö Offspring Study (MOS) and SCAPIS-Malmö] for a research project within the Department of Medical Sciences at Lund University. Scope: The primary scope: Analysis of around 3 000 MOS and 3 500 SCAPIS Malmö samples (N = approximately 6 500) through 2019. Option for the buyer to extend the contract for additional analysis throughout 2020–2023. MOS is an ongoing study and by the end of 2020 we expect another 1 500–3 000 samples to be analyzed. In addition, a return visit for some participants is planned in 2020–2023, it may be necessary to analyze samples from these visits. Also, there are ongoing intervention studies and other population studies on a smaller scale compared to MOS and SCAPIS-Malmö at the institution and there are plans to carry out metagnomic sequencing on these after 2019.
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Upphandlingens totala värde: 31 000 000 SEK 💰
Meddelandeinformation
Dokumenttyp: Meddelande om tilldelning

Förfarande
Anbudstyp: Ej tillämpligt
Kriterier för tilldelning
Lägsta pris

Referens
Datum
Avsändningsdatum: 2019-04-03 📅
Publiceringsdatum: 2019-04-08 📅
Identifierare
Meddelandenummer: 2019/S 069-163008
Refererar till meddelande: 2018/S 248-573561
EUT-S-nummer: 69
Ytterligare information
Visma notice: https://opic.com/id/afdxecbtru

Objekt
Upphandlingens omfattning
Kort beskrivning:
Scope:
Option for the buyer to extend the contract for additional analysis throughout 2020–2023.
MOS is an ongoing study and by the end of 2020 we expect another 1 500–3 000 samples to be analyzed. In addition, a return visit for some participants is planned in 2020–2023, it may be necessary to analyze samples from these visits.
Sample receipt and registration:
DNA extraction from initially 6 500 fecal samples and an option to buy additional sample analysis DNA library preparation for shotgun metagenomics sequencing.
DNA sequencing.
Bioinformatic analysis and delivery of results to the customer.
Shipment of original samples and DNA back to the customer (transport covered by customer).
Estimated contract start date is 1.3.2019. The contract applies from the start date up to and including 31.8.2020, the buyer is subsequently entitled to extend the contract until 28.2.2023, or depending on start date with a maximum contract period of 4 years. Extensions may be done in several rounds for shorter or longer periods.
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Tilldelning av kontrakt
Datum för avtalstecknande: 2019-02-08 📅
Namn: Clinical Microbiomics
Nationellt registreringsnummer: VATnumber:DK37230634
Postadress: Ole Maaløes vej 3
Postort: Copenhagen
Postnummer: 2200
Land: Danmark 🇩🇰
E-post: jacob@clinical-microbiomics.com 📧
Land: Skåne län 🏙️
Webbadress: http://www.clinical-microbiomics.com 🌏
Upphandlingens totala värde: 31 000 000 SEK 💰
Information om anbud
Antal mottagna anbud: 2
Källa: OJS 2019/S 069-163008 (2019-04-03)
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